Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
VCPP55072 AC022145.2-201ENST00000598203 171 ntBASIC17.95■□□□□ 0.46
VCPP55072 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.95■□□□□ 0.46
VCPP55072 AC025580.3-201ENST00000617932 1424 ntBASIC17.95■□□□□ 0.46
VCPP55072 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
VCPP55072 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.95■□□□□ 0.46
VCPP55072 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.95■□□□□ 0.46
VCPP55072 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.95■□□□□ 0.46
VCPP55072 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
VCPP55072 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VCPP55072 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VCPP55072 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.94■□□□□ 0.46
VCPP55072 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
VCPP55072 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VCPP55072 TNRC18P3-201ENST00000441896 2691 ntBASIC17.94■□□□□ 0.46
VCPP55072 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.94■□□□□ 0.46
VCPP55072 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.94■□□□□ 0.46
VCPP55072 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.94■□□□□ 0.46
VCPP55072 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 AC010654.1-201ENST00000615722 808 ntBASIC17.94■□□□□ 0.46
VCPP55072 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.94■□□□□ 0.46
VCPP55072 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
VCPP55072 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.94■□□□□ 0.46
VCPP55072 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VCPP55072 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VCPP55072 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VCPP55072 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.93■□□□□ 0.46
VCPP55072 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 LINC00982-205ENST00000420957 435 ntBASIC17.93■□□□□ 0.46
VCPP55072 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.93■□□□□ 0.46
VCPP55072 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.93■□□□□ 0.46
VCPP55072 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.93■□□□□ 0.46
VCPP55072 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VCPP55072 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VCPP55072 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
VCPP55072 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms