Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
NPHP4O75161 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP4O75161 AMT-232ENST00000636199 1546 ntTSL 5 BASIC23.12■■□□□ 1.29
NPHP4O75161 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP4O75161 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 FTH1P14-201ENST00000482930 551 ntBASIC23.11■■□□□ 1.29
NPHP4O75161 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
NPHP4O75161 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC23.11■■□□□ 1.29
NPHP4O75161 DUX4L45-201ENST00000566406 1057 ntBASIC23.11■■□□□ 1.29
NPHP4O75161 AL365330.1-201ENST00000607459 531 ntBASIC23.11■■□□□ 1.29
NPHP4O75161 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 AC006277.1-201ENST00000624348 1610 ntBASIC23.11■■□□□ 1.29
NPHP4O75161 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC23.11■■□□□ 1.29
NPHP4O75161 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
NPHP4O75161 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP4O75161 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP4O75161 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP4O75161 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP4O75161 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC23.1■■□□□ 1.29
NPHP4O75161 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP4O75161 PTP4A1P2-201ENST00000546033 454 ntBASIC23.1■■□□□ 1.29
NPHP4O75161 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
NPHP4O75161 AL118558.3-201ENST00000607414 1079 ntBASIC23.1■■□□□ 1.29
NPHP4O75161 ABBA01031663.1-201ENST00000635630 790 ntBASIC23.1■■□□□ 1.29
NPHP4O75161 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP4O75161 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP4O75161 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP4O75161 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 KRT8P39-201ENST00000396270 1433 ntBASIC23.1■■□□□ 1.29
NPHP4O75161 AC016396.2-201ENST00000562575 1417 ntBASIC23.1■■□□□ 1.29
NPHP4O75161 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP4O75161 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP4O75161 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP4O75161 OLR1-203ENST00000432556 950 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP4O75161 AL359711.2-201ENST00000563105 872 ntBASIC23.09■■□□□ 1.29
NPHP4O75161 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP4O75161 LINC01115-203ENST00000606068 577 ntBASIC23.09■■□□□ 1.29
NPHP4O75161 AC091271.1-201ENST00000611877 1162 ntBASIC23.09■■□□□ 1.29
NPHP4O75161 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP4O75161 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
NPHP4O75161 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP4O75161 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP4O75161 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
NPHP4O75161 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP4O75161 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 AC026954.1-201ENST00000429771 1293 ntBASIC23.08■■□□□ 1.29
NPHP4O75161 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC23.08■■□□□ 1.29
NPHP4O75161 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP4O75161 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
NPHP4O75161 AC124283.3-201ENST00000570869 594 ntBASIC23.08■■□□□ 1.29
NPHP4O75161 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC23.08■■□□□ 1.29
NPHP4O75161 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC23.08■■□□□ 1.29
NPHP4O75161 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP4O75161 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
NPHP4O75161 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP4O75161 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP4O75161 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP4O75161 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP4O75161 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
NPHP4O75161 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
NPHP4O75161 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC23.08■■□□□ 1.28
NPHP4O75161 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC23.08■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms