Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AL355864.2-201ENST00000447420 863 ntBASIC27.19■■□□□ 1.94
IFT140Q96RY7 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
IFT140Q96RY7 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
IFT140Q96RY7 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AC105129.2-201ENST00000559536 390 ntBASIC27.19■■□□□ 1.94
IFT140Q96RY7 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
IFT140Q96RY7 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 AC124947.2-201ENST00000547118 1133 ntBASIC27.18■■□□□ 1.94
IFT140Q96RY7 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
IFT140Q96RY7 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
IFT140Q96RY7 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
IFT140Q96RY7 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
IFT140Q96RY7 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 AL118558.3-201ENST00000607414 1079 ntBASIC27.17■■□□□ 1.94
IFT140Q96RY7 RHOXF1P1-202ENST00000635473 501 ntBASIC27.17■■□□□ 1.94
IFT140Q96RY7 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
IFT140Q96RY7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
IFT140Q96RY7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 AC090164.3-201ENST00000610780 2143 ntBASIC27.17■■□□□ 1.94
IFT140Q96RY7 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC27.17■■□□□ 1.94
IFT140Q96RY7 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 GNRHR2-203ENST00000581100 1187 ntBASIC27.16■■□□□ 1.94
IFT140Q96RY7 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 AC091271.1-201ENST00000611877 1162 ntBASIC27.16■■□□□ 1.94
IFT140Q96RY7 AC244669.2-201ENST00000612320 853 ntBASIC27.16■■□□□ 1.94
IFT140Q96RY7 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 CYP4F24P-201ENST00000586049 1580 ntBASIC27.16■■□□□ 1.94
IFT140Q96RY7 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
IFT140Q96RY7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC27.16■■□□□ 1.94
IFT140Q96RY7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 AL138781.2-201ENST00000617896 1843 ntBASIC27.15■■□□□ 1.94
IFT140Q96RY7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 RPL13P2-201ENST00000440687 659 ntBASIC27.15■■□□□ 1.94
IFT140Q96RY7 AC106760.1-201ENST00000508690 800 ntBASIC27.15■■□□□ 1.94
IFT140Q96RY7 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC27.15■■□□□ 1.94
IFT140Q96RY7 AC008687.7-202ENST00000637404 953 ntBASIC27.15■■□□□ 1.94
IFT140Q96RY7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
IFT140Q96RY7 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms