Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PCNAP12004 PCDHB17P-201ENST00000539533 2393 ntBASIC16.4■□□□□ 0.22
PCNAP12004 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
PCNAP12004 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PCNAP12004 AL513477.1-201ENST00000602865 2407 ntBASIC16.39■□□□□ 0.21
PCNAP12004 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 AL662844.4-201ENST00000606367 2838 ntBASIC16.39■□□□□ 0.21
PCNAP12004 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.39■□□□□ 0.21
PCNAP12004 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.39■□□□□ 0.21
PCNAP12004 DUSP5P1-201ENST00000441325 1139 ntBASIC16.39■□□□□ 0.21
PCNAP12004 EMBP1-201ENST00000458200 901 ntBASIC16.39■□□□□ 0.21
PCNAP12004 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.39■□□□□ 0.21
PCNAP12004 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.39■□□□□ 0.21
PCNAP12004 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.39■□□□□ 0.21
PCNAP12004 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 AC025062.2-201ENST00000605477 670 ntBASIC16.39■□□□□ 0.21
PCNAP12004 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.39■□□□□ 0.21
PCNAP12004 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.39■□□□□ 0.21
PCNAP12004 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.39■□□□□ 0.21
PCNAP12004 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.39■□□□□ 0.21
PCNAP12004 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.39■□□□□ 0.21
PCNAP12004 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PCNAP12004 PCDHA1-201ENST00000378133 2726 ntBASIC16.39■□□□□ 0.21
PCNAP12004 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.38■□□□□ 0.21
PCNAP12004 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PCNAP12004 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 AC073648.2-201ENST00000510116 352 ntBASIC16.38■□□□□ 0.21
PCNAP12004 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.38■□□□□ 0.21
PCNAP12004 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PCNAP12004 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.38■□□□□ 0.21
PCNAP12004 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 AC078925.2-201ENST00000624013 1973 ntBASIC16.38■□□□□ 0.21
PCNAP12004 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.38■□□□□ 0.21
PCNAP12004 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
PCNAP12004 AL021920.2-201ENST00000624828 1351 ntBASIC16.38■□□□□ 0.21
PCNAP12004 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCNAP12004 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
PCNAP12004 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCNAP12004 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCNAP12004 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCNAP12004 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.37■□□□□ 0.21
PCNAP12004 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCNAP12004 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.37■□□□□ 0.21
PCNAP12004 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.37■□□□□ 0.21
PCNAP12004 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms