Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 SPDYE14P-201ENST00000442619 822 ntBASIC16.31■□□□□ 0.2
TNFP01375 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.31■□□□□ 0.2
TNFP01375 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.31■□□□□ 0.2
TNFP01375 AC092364.2-202ENST00000597012 1073 ntBASIC16.31■□□□□ 0.2
TNFP01375 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TNFP01375 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TNFP01375 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
TNFP01375 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.31■□□□□ 0.2
TNFP01375 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
TNFP01375 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TNFP01375 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TNFP01375 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TNFP01375 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TNFP01375 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.3■□□□□ 0.2
TNFP01375 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.3■□□□□ 0.2
TNFP01375 KLF2P3-201ENST00000451977 1087 ntBASIC16.3■□□□□ 0.2
TNFP01375 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 DUX4L27-201ENST00000554796 1261 ntBASIC16.3■□□□□ 0.2
TNFP01375 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.3■□□□□ 0.2
TNFP01375 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.3■□□□□ 0.2
TNFP01375 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 AL391256.1-201ENST00000443260 1855 ntBASIC16.3■□□□□ 0.2
TNFP01375 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 AL671710.1-201ENST00000610245 2349 ntBASIC16.3■□□□□ 0.2
TNFP01375 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.3■□□□□ 0.2
TNFP01375 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.3■□□□□ 0.2
TNFP01375 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TNFP01375 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TNFP01375 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.29■□□□□ 0.2
TNFP01375 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.29■□□□□ 0.2
TNFP01375 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 AC051619.7-201ENST00000568314 623 ntBASIC16.29■□□□□ 0.2
TNFP01375 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.29■□□□□ 0.2
TNFP01375 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TNFP01375 FZD10-202ENST00000539839 3282 ntBASIC16.29■□□□□ 0.2
TNFP01375 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.29■□□□□ 0.2
TNFP01375 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms