Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
TDP1Q9NUW8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AC236430.1-201ENST00000402231 743 ntBASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AC092580.3-201ENST00000430932 139 ntBASIC17.19■□□□□ 0.34
TDP1Q9NUW8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 UGT1A2P-201ENST00000454886 866 ntBASIC17.19■□□□□ 0.34
TDP1Q9NUW8 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 RN7SL204P-201ENST00000582831 262 ntBASIC17.19■□□□□ 0.34
TDP1Q9NUW8 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 AC003101.2-201ENST00000612557 442 ntBASIC17.19■□□□□ 0.34
TDP1Q9NUW8 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TDP1Q9NUW8 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 AC002472.2-201ENST00000442739 958 ntBASIC17.18■□□□□ 0.34
TDP1Q9NUW8 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 TERF1P3-201ENST00000505638 1227 ntBASIC17.18■□□□□ 0.34
TDP1Q9NUW8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TDP1Q9NUW8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 FOXO1B-201ENST00000504678 1527 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 KRT8P39-201ENST00000396270 1433 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC190387.1-201ENST00000551683 408 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC007967.4-201ENST00000614700 386 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 PCDHB17P-201ENST00000539533 2393 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 AC073439.1-201ENST00000624121 1774 ntBASIC17.17■□□□□ 0.34
TDP1Q9NUW8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TDP1Q9NUW8 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TDP1Q9NUW8 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.16■□□□□ 0.34
TDP1Q9NUW8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TDP1Q9NUW8 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms