Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.11■□□□□ 0.49
KRT39Q6A163 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.11■□□□□ 0.49
KRT39Q6A163 RHOQP3-201ENST00000437982 621 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 AL513480.1-201ENST00000451731 511 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.11■□□□□ 0.49
KRT39Q6A163 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.11■□□□□ 0.49
KRT39Q6A163 AL645728.2-201ENST00000641974 660 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 ZNF259P1-201ENST00000407656 1365 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.11■□□□□ 0.49
KRT39Q6A163 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 AL512652.2-201ENST00000625156 1716 ntBASIC18.11■□□□□ 0.49
KRT39Q6A163 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.11■□□□□ 0.49
KRT39Q6A163 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
KRT39Q6A163 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
KRT39Q6A163 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
KRT39Q6A163 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
KRT39Q6A163 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
KRT39Q6A163 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SLC25A1P1-201ENST00000528351 927 ntBASIC18.1■□□□□ 0.49
KRT39Q6A163 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
KRT39Q6A163 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.1■□□□□ 0.49
KRT39Q6A163 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.1■□□□□ 0.49
KRT39Q6A163 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.1■□□□□ 0.49
KRT39Q6A163 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.1■□□□□ 0.49
KRT39Q6A163 AC064836.3-201ENST00000607928 673 ntBASIC18.1■□□□□ 0.49
KRT39Q6A163 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
KRT39Q6A163 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
KRT39Q6A163 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.1■□□□□ 0.49
KRT39Q6A163 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
KRT39Q6A163 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
KRT39Q6A163 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
KRT39Q6A163 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.09■□□□□ 0.49
KRT39Q6A163 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.09■□□□□ 0.49
KRT39Q6A163 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.09■□□□□ 0.49
KRT39Q6A163 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.09■□□□□ 0.49
KRT39Q6A163 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.09■□□□□ 0.49
KRT39Q6A163 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.09■□□□□ 0.49
KRT39Q6A163 AL031432.2-201ENST00000566714 459 ntBASIC18.09■□□□□ 0.49
KRT39Q6A163 AC106730.1-201ENST00000566722 1090 ntBASIC18.09■□□□□ 0.49
KRT39Q6A163 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 AL928711.1-201ENST00000570165 459 ntBASIC18.09■□□□□ 0.49
KRT39Q6A163 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.09■□□□□ 0.49
KRT39Q6A163 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
KRT39Q6A163 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.09■□□□□ 0.49
KRT39Q6A163 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
KRT39Q6A163 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
KRT39Q6A163 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
KRT39Q6A163 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
KRT39Q6A163 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms