Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC22.01■■□□□ 1.11
USP54Q70EL1 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC22.01■■□□□ 1.11
USP54Q70EL1 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC22.01■■□□□ 1.11
USP54Q70EL1 AC023310.3-201ENST00000557027 670 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC100756.1-201ENST00000562736 682 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC138749.3-201ENST00000567691 622 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
USP54Q70EL1 AC025048.3-201ENST00000590609 569 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC026979.3-201ENST00000607315 403 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC116165.1-201ENST00000611806 668 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AC005702.4-201ENST00000618393 416 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 AL033527.5-202ENST00000641632 1098 ntBASIC22.01■■□□□ 1.11
USP54Q70EL1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
USP54Q70EL1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 AL603756.1-201ENST00000606511 2163 ntBASIC22■■□□□ 1.11
USP54Q70EL1 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
USP54Q70EL1 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC22■■□□□ 1.11
USP54Q70EL1 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22■■□□□ 1.11
USP54Q70EL1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 SPDYE19P-201ENST00000338590 713 ntBASIC22■■□□□ 1.11
USP54Q70EL1 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC22■■□□□ 1.11
USP54Q70EL1 AL353779.1-201ENST00000434793 351 ntBASIC22■■□□□ 1.11
USP54Q70EL1 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 CYP4F24P-201ENST00000586049 1580 ntBASIC22■■□□□ 1.11
USP54Q70EL1 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC22■■□□□ 1.11
USP54Q70EL1 PCGF3-213ENST00000620529 1899 ntBASIC22■■□□□ 1.11
USP54Q70EL1 AC004461.2-201ENST00000629517 803 ntBASIC22■■□□□ 1.11
USP54Q70EL1 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC22■■□□□ 1.11
USP54Q70EL1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
USP54Q70EL1 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC22■■□□□ 1.11
USP54Q70EL1 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC22■■□□□ 1.11
USP54Q70EL1 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
USP54Q70EL1 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.99■■□□□ 1.11
USP54Q70EL1 TMEM14DP-201ENST00000422205 345 ntBASIC21.99■■□□□ 1.11
USP54Q70EL1 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.99■■□□□ 1.11
USP54Q70EL1 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21.99■■□□□ 1.11
USP54Q70EL1 AC008494.3-201ENST00000606615 944 ntBASIC21.99■■□□□ 1.11
USP54Q70EL1 AL365330.1-201ENST00000607459 531 ntBASIC21.99■■□□□ 1.11
USP54Q70EL1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
USP54Q70EL1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.99■■□□□ 1.11
USP54Q70EL1 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.99■■□□□ 1.11
USP54Q70EL1 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC21.99■■□□□ 1.11
USP54Q70EL1 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
USP54Q70EL1 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.99■■□□□ 1.11
USP54Q70EL1 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
USP54Q70EL1 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
USP54Q70EL1 HIST3H2BA-201ENST00000436555 524 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.98■■□□□ 1.11
USP54Q70EL1 ACA64.2-201ENST00000459014 129 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC21.98■■□□□ 1.11
USP54Q70EL1 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.98■■□□□ 1.11
USP54Q70EL1 IGHV3-71-201ENST00000523324 359 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 RRP7BP-205ENST00000566851 833 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC21.98■■□□□ 1.11
USP54Q70EL1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC21.98■■□□□ 1.11
USP54Q70EL1 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
USP54Q70EL1 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
USP54Q70EL1 CHCHD2P3-201ENST00000603038 451 ntBASIC21.98■■□□□ 1.11
USP54Q70EL1 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
USP54Q70EL1 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms