Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AC005332.8-201ENST00000622750 2735 ntBASIC17.25■□□□□ 0.35
TDP1Q9NUW8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AC142381.1-201ENST00000426099 345 ntBASIC17.25■□□□□ 0.35
TDP1Q9NUW8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.25■□□□□ 0.35
TDP1Q9NUW8 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 MIR4453-201ENST00000584019 89 ntBASIC17.25■□□□□ 0.35
TDP1Q9NUW8 AC073389.1-201ENST00000595595 795 ntBASIC17.25■□□□□ 0.35
TDP1Q9NUW8 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TDP1Q9NUW8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.24■□□□□ 0.35
TDP1Q9NUW8 AC013467.2-201ENST00000605472 835 ntBASIC17.24■□□□□ 0.35
TDP1Q9NUW8 AL390754.1-201ENST00000619088 582 ntBASIC17.24■□□□□ 0.35
TDP1Q9NUW8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 AC006277.1-201ENST00000624348 1610 ntBASIC17.24■□□□□ 0.35
TDP1Q9NUW8 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.24■□□□□ 0.35
TDP1Q9NUW8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 AC097493.3-201ENST00000509725 367 ntBASIC17.23■□□□□ 0.35
TDP1Q9NUW8 RARRES2P9-201ENST00000565168 469 ntBASIC17.23■□□□□ 0.35
TDP1Q9NUW8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TDP1Q9NUW8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms