Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AC116353.5-201ENST00000638148 1699 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AC023141.5-201ENST00000458585 616 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RN7SL589P-201ENST00000481268 310 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 DUX4L17-201ENST00000557360 1267 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AC012569.1-201ENST00000591191 1524 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 AC084018.2-201ENST00000613093 2607 ntBASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
TRAIPQ9BWF2 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 AC093525.9-201ENST00000624961 1746 ntBASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 MIR3909-201ENST00000579518 119 ntBASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 AL161645.1-201ENST00000622716 1255 ntBASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRAIPQ9BWF2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AC093520.2-201ENST00000561830 333 ntBASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AC015911.4-201ENST00000588022 1070 ntBASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AL009183.1-201ENST00000603760 355 ntBASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 AC009093.7-201ENST00000623853 1223 ntBASIC18.4■□□□□ 0.54
TRAIPQ9BWF2 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms