Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.8■□□□□ 0.92
SYNE4Q8N205 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SYNE4Q8N205 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 KRT18P34-201ENST00000488218 1270 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 AC105233.2-201ENST00000523697 349 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 AF228730.5-201ENST00000530288 346 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 AC124947.2-201ENST00000547118 1133 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 AL662799.1-202ENST00000614205 422 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 AL590560.3-201ENST00000623350 461 ntBASIC20.79■□□□□ 0.92
SYNE4Q8N205 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.79■□□□□ 0.92
SYNE4Q8N205 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SYNE4Q8N205 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 NME2P1-201ENST00000426182 414 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 AC241585.1-201ENST00000433527 519 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AC027369.6-201ENST00000525520 931 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 COQ6-210ENST00000554920 649 ntTSL 3 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AL596325.1-201ENST00000563991 1082 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 SPDYE22P-201ENST00000582158 798 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 SPDYE12P-201ENST00000618416 771 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 AC100757.3-201ENST00000622361 1406 ntBASIC20.78■□□□□ 0.92
SYNE4Q8N205 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
SYNE4Q8N205 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SYNE4Q8N205 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AC073439.1-201ENST00000624121 1774 ntBASIC20.77■□□□□ 0.92
SYNE4Q8N205 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 AL138828.2-201ENST00000615812 383 ntBASIC20.77■□□□□ 0.92
SYNE4Q8N205 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SYNE4Q8N205 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.77■□□□□ 0.92
SYNE4Q8N205 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
SYNE4Q8N205 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SYNE4Q8N205 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SYNE4Q8N205 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms