Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL1A1P02452 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.07■□□□□ 0.8
COL1A1P02452 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL1A1P02452 AL603756.1-201ENST00000606511 2163 ntBASIC20.07■□□□□ 0.8
COL1A1P02452 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
COL1A1P02452 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL1A1P02452 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
COL1A1P02452 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.06■□□□□ 0.8
COL1A1P02452 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC20.06■□□□□ 0.8
COL1A1P02452 AC241585.1-201ENST00000433527 519 ntBASIC20.06■□□□□ 0.8
COL1A1P02452 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 SPDYE22P-201ENST00000582158 798 ntBASIC20.06■□□□□ 0.8
COL1A1P02452 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL1A1P02452 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
COL1A1P02452 AL031731.1-201ENST00000642131 2094 ntBASIC20.06■□□□□ 0.8
COL1A1P02452 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL1A1P02452 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC20.05■□□□□ 0.8
COL1A1P02452 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.05■□□□□ 0.8
COL1A1P02452 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.05■□□□□ 0.8
COL1A1P02452 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 AC009118.2-201ENST00000613275 655 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL1A1P02452 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.05■□□□□ 0.8
COL1A1P02452 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL1A1P02452 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 MRPS18AP1-201ENST00000414458 589 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.05■□□□□ 0.8
COL1A1P02452 AL512638.1-201ENST00000457493 794 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.05■□□□□ 0.8
COL1A1P02452 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.05■□□□□ 0.8
COL1A1P02452 AP005018.1-201ENST00000525475 301 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.05■□□□□ 0.8
COL1A1P02452 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
COL1A1P02452 AL139011.1-202ENST00000642063 584 ntBASIC20.05■□□□□ 0.8
COL1A1P02452 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL1A1P02452 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.05■□□□□ 0.8
COL1A1P02452 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC20.04■□□□□ 0.8
COL1A1P02452 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.04■□□□□ 0.8
COL1A1P02452 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.04■□□□□ 0.8
COL1A1P02452 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
COL1A1P02452 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
COL1A1P02452 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.04■□□□□ 0.8
COL1A1P02452 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
COL1A1P02452 AC027307.3-201ENST00000594262 1100 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms