Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 PMS2P7-201ENST00000506558 1336 ntBASIC16.74■□□□□ 0.27
VPS35Q96QK1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 AC040169.1-201ENST00000565382 521 ntBASIC16.74■□□□□ 0.27
VPS35Q96QK1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 AC023141.13-201ENST00000604991 943 ntBASIC16.74■□□□□ 0.27
VPS35Q96QK1 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.74■□□□□ 0.27
VPS35Q96QK1 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VPS35Q96QK1 AL513477.1-201ENST00000602865 2407 ntBASIC16.74■□□□□ 0.27
VPS35Q96QK1 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 PCDHA12-202ENST00000613593 2588 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 MIR940-201ENST00000401276 94 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 AL513480.1-201ENST00000451731 511 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 AC018845.2-201ENST00000568326 409 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 MIR4515-201ENST00000584082 81 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 AC013467.2-201ENST00000605472 835 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 AL645728.2-201ENST00000641974 660 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 LINC00895-201ENST00000629028 1637 ntBASIC16.73■□□□□ 0.27
VPS35Q96QK1 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS35Q96QK1 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS35Q96QK1 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 SLC22A20-204ENST00000530038 1673 ntBASIC16.72■□□□□ 0.27
VPS35Q96QK1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS35Q96QK1 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.72■□□□□ 0.27
VPS35Q96QK1 MIR4492-201ENST00000581627 80 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms