Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL5A1P20908 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.96■□□□□ 0.15
COL5A1P20908 TUBB8P12-201ENST00000308911 1335 ntBASIC15.96■□□□□ 0.15
COL5A1P20908 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL5A1P20908 TUBB7P-202ENST00000428444 1305 ntBASIC15.96■□□□□ 0.15
COL5A1P20908 TUBB8P7-204ENST00000567960 1332 ntBASIC15.96■□□□□ 0.15
COL5A1P20908 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
COL5A1P20908 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL5A1P20908 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.96■□□□□ 0.15
COL5A1P20908 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
COL5A1P20908 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.96■□□□□ 0.15
COL5A1P20908 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 MIR1909-201ENST00000411312 80 ntBASIC15.96■□□□□ 0.14
COL5A1P20908 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.14
COL5A1P20908 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.96■□□□□ 0.14
COL5A1P20908 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 AC135586.1-201ENST00000539323 574 ntBASIC15.96■□□□□ 0.14
COL5A1P20908 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.96■□□□□ 0.14
COL5A1P20908 AC105021.1-202ENST00000570572 669 ntBASIC15.96■□□□□ 0.14
COL5A1P20908 AC132938.2-201ENST00000579188 680 ntBASIC15.96■□□□□ 0.14
COL5A1P20908 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 AL591163.1-201ENST00000641757 987 ntBASIC15.96■□□□□ 0.14
COL5A1P20908 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
COL5A1P20908 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
COL5A1P20908 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
COL5A1P20908 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.96■□□□□ 0.14
COL5A1P20908 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.96■□□□□ 0.14
COL5A1P20908 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.95■□□□□ 0.14
COL5A1P20908 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
COL5A1P20908 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL5A1P20908 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 PCDHB18P-201ENST00000524813 2368 ntBASIC15.95■□□□□ 0.14
COL5A1P20908 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL5A1P20908 AC093004.1-201ENST00000508850 424 ntBASIC15.95■□□□□ 0.14
COL5A1P20908 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 AC013467.2-201ENST00000605472 835 ntBASIC15.95■□□□□ 0.14
COL5A1P20908 AC007431.3-201ENST00000623221 587 ntBASIC15.95■□□□□ 0.14
COL5A1P20908 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL5A1P20908 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.95■□□□□ 0.14
COL5A1P20908 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.95■□□□□ 0.14
COL5A1P20908 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
COL5A1P20908 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.95■□□□□ 0.14
COL5A1P20908 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
COL5A1P20908 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.94■□□□□ 0.14
COL5A1P20908 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.94■□□□□ 0.14
COL5A1P20908 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.94■□□□□ 0.14
COL5A1P20908 AC106886.1-201ENST00000568660 600 ntBASIC15.94■□□□□ 0.14
COL5A1P20908 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
COL5A1P20908 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC15.94■□□□□ 0.14
COL5A1P20908 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
COL5A1P20908 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.94■□□□□ 0.14
COL5A1P20908 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
COL5A1P20908 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.94■□□□□ 0.14
COL5A1P20908 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
COL5A1P20908 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL5A1P20908 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.94■□□□□ 0.14
COL5A1P20908 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.94■□□□□ 0.14
COL5A1P20908 AC055876.2-201ENST00000531834 546 ntBASIC15.94■□□□□ 0.14
COL5A1P20908 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.94■□□□□ 0.14
COL5A1P20908 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.93■□□□□ 0.14
COL5A1P20908 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL5A1P20908 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
COL5A1P20908 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.93■□□□□ 0.14
COL5A1P20908 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL5A1P20908 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms