Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH5O43196 PCDHB19P-201ENST00000570871 2371 ntBASIC23.31■■□□□ 1.32
MSH5O43196 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH5O43196 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH5O43196 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC23.31■■□□□ 1.32
MSH5O43196 IRX1P1-201ENST00000438849 1838 ntBASIC23.31■■□□□ 1.32
MSH5O43196 CU633906.2-205ENST00000624847 1468 ntTSL 5 BASIC23.3■■□□□ 1.32
MSH5O43196 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
MSH5O43196 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 ING3-202ENST00000339121 1222 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 TPTE2P3-201ENST00000441562 1189 ntBASIC23.3■■□□□ 1.32
MSH5O43196 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH5O43196 AL139824.2-201ENST00000458731 1095 ntBASIC23.3■■□□□ 1.32
MSH5O43196 CSTA-202ENST00000479204 821 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH5O43196 RNU6-751P-201ENST00000516382 101 ntBASIC23.3■■□□□ 1.32
MSH5O43196 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH5O43196 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH5O43196 SART3-203ENST00000546611 1184 ntBASIC23.3■■□□□ 1.32
MSH5O43196 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC23.3■■□□□ 1.32
MSH5O43196 AC074051.4-201ENST00000564888 892 ntBASIC23.3■■□□□ 1.32
MSH5O43196 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH5O43196 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
MSH5O43196 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC23.3■■□□□ 1.32
MSH5O43196 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
MSH5O43196 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC23.3■■□□□ 1.32
MSH5O43196 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
MSH5O43196 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
MSH5O43196 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH5O43196 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 DDT-203ENST00000403754 569 ntTSL 3 BASIC23.29■■□□□ 1.32
MSH5O43196 LINC02262-201ENST00000416680 735 ntTSL 3 BASIC23.29■■□□□ 1.32
MSH5O43196 LMLN-AS1-201ENST00000423460 542 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 AC092810.1-201ENST00000429208 1224 ntBASIC23.29■■□□□ 1.32
MSH5O43196 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 HS6ST1P1-201ENST00000481504 1234 ntBASIC23.29■■□□□ 1.32
MSH5O43196 ASB8-215ENST00000540782 659 ntTSL 3 BASIC23.29■■□□□ 1.32
MSH5O43196 AL132640.1-201ENST00000559594 619 ntBASIC23.29■■□□□ 1.32
MSH5O43196 AC012640.2-201ENST00000561606 901 ntBASIC23.29■■□□□ 1.32
MSH5O43196 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH5O43196 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH5O43196 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
MSH5O43196 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH5O43196 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.28■■□□□ 1.32
MSH5O43196 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 IMPG1-203ENST00000369963 868 ntTSL 5 BASIC23.28■■□□□ 1.32
MSH5O43196 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH5O43196 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms