Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RPL37AP1-201ENST00000412502 279 ntBASIC19.46■□□□□ 0.71
CTCFP49711 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 GPAA1P2-201ENST00000417923 928 ntBASIC19.46■□□□□ 0.71
CTCFP49711 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC19.46■□□□□ 0.71
CTCFP49711 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.46■□□□□ 0.71
CTCFP49711 PFN1P12-201ENST00000455938 534 ntBASIC19.46■□□□□ 0.71
CTCFP49711 DUTP2-201ENST00000519164 463 ntBASIC19.46■□□□□ 0.71
CTCFP49711 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.46■□□□□ 0.71
CTCFP49711 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.46■□□□□ 0.71
CTCFP49711 AC015936.2-201ENST00000593177 259 ntBASIC19.46■□□□□ 0.71
CTCFP49711 AL589739.1-201ENST00000607720 493 ntBASIC19.46■□□□□ 0.71
CTCFP49711 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.46■□□□□ 0.71
CTCFP49711 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.46■□□□□ 0.71
CTCFP49711 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.45■□□□□ 0.7
CTCFP49711 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CTCFP49711 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CTCFP49711 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.45■□□□□ 0.7
CTCFP49711 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
CTCFP49711 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CTCFP49711 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC19.45■□□□□ 0.7
CTCFP49711 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.45■□□□□ 0.7
CTCFP49711 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC19.45■□□□□ 0.7
CTCFP49711 MPRIPP1-201ENST00000452433 1089 ntBASIC19.45■□□□□ 0.7
CTCFP49711 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.45■□□□□ 0.7
CTCFP49711 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC19.45■□□□□ 0.7
CTCFP49711 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 ZNF890P-202ENST00000530367 1156 ntBASIC19.45■□□□□ 0.7
CTCFP49711 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.45■□□□□ 0.7
CTCFP49711 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.45■□□□□ 0.7
CTCFP49711 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.45■□□□□ 0.7
CTCFP49711 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CTCFP49711 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CTCFP49711 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.44■□□□□ 0.7
CTCFP49711 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 CENPM-206ENST00000407253 818 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 RASL12-203ENST00000434605 982 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.44■□□□□ 0.7
CTCFP49711 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 AC005412.3-201ENST00000580309 715 ntBASIC19.44■□□□□ 0.7
CTCFP49711 AC243960.2-201ENST00000600996 747 ntBASIC19.44■□□□□ 0.7
CTCFP49711 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.44■□□□□ 0.7
CTCFP49711 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.44■□□□□ 0.7
CTCFP49711 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 AL499627.1-201ENST00000569373 2188 ntBASIC19.44■□□□□ 0.7
CTCFP49711 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
CTCFP49711 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.44■□□□□ 0.7
CTCFP49711 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CTCFP49711 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
CTCFP49711 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.43■□□□□ 0.7
CTCFP49711 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.43■□□□□ 0.7
CTCFP49711 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms