Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 SART3-203ENST00000546611 1184 ntBASIC17.43■□□□□ 0.38
USP29Q9HBJ7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AC145285.3-201ENST00000564603 959 ntBASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AL589182.2-201ENST00000619332 1049 ntBASIC17.43■□□□□ 0.38
USP29Q9HBJ7 AC116407.3-201ENST00000623905 1129 ntBASIC17.43■□□□□ 0.38
USP29Q9HBJ7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 LINC00895-201ENST00000629028 1637 ntBASIC17.43■□□□□ 0.38
USP29Q9HBJ7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
USP29Q9HBJ7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AL021920.2-201ENST00000624828 1351 ntBASIC17.42■□□□□ 0.38
USP29Q9HBJ7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AL139424.1-201ENST00000607572 797 ntBASIC17.42■□□□□ 0.38
USP29Q9HBJ7 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.42■□□□□ 0.38
USP29Q9HBJ7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 KRT8P49-201ENST00000604166 1432 ntBASIC17.41■□□□□ 0.38
USP29Q9HBJ7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 OR6D1P-202ENST00000641007 5290 ntBASIC17.41■□□□□ 0.38
USP29Q9HBJ7 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 HNRNPDP1-201ENST00000439535 754 ntBASIC17.41■□□□□ 0.38
USP29Q9HBJ7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 AC021087.4-201ENST00000563761 564 ntBASIC17.41■□□□□ 0.38
USP29Q9HBJ7 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 AL049840.3-201ENST00000602669 611 ntBASIC17.41■□□□□ 0.38
USP29Q9HBJ7 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
USP29Q9HBJ7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms