Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.96■□□□□ 0.15
RFX3P48380 LINC02012-201ENST00000608206 1725 ntBASIC15.96■□□□□ 0.15
RFX3P48380 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
RFX3P48380 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
RFX3P48380 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
RFX3P48380 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
RFX3P48380 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 SLC25A1P3-201ENST00000395415 828 ntBASIC15.95■□□□□ 0.14
RFX3P48380 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 LINC00982-205ENST00000420957 435 ntBASIC15.95■□□□□ 0.14
RFX3P48380 AL450487.1-201ENST00000426799 995 ntBASIC15.95■□□□□ 0.14
RFX3P48380 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 PP7080-204ENST00000510714 601 ntTSL 3 BASIC15.95■□□□□ 0.14
RFX3P48380 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.95■□□□□ 0.14
RFX3P48380 AC064862.7-201ENST00000604520 867 ntBASIC15.95■□□□□ 0.14
RFX3P48380 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
RFX3P48380 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.95■□□□□ 0.14
RFX3P48380 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 AC092068.3-201ENST00000587894 2016 ntBASIC15.95■□□□□ 0.14
RFX3P48380 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.95■□□□□ 0.14
RFX3P48380 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.95■□□□□ 0.14
RFX3P48380 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.95■□□□□ 0.14
RFX3P48380 EGFEM1P-202ENST00000431685 1563 ntBASIC15.95■□□□□ 0.14
RFX3P48380 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
RFX3P48380 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.95■□□□□ 0.14
RFX3P48380 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 MTDHP4-201ENST00000600287 670 ntBASIC15.94■□□□□ 0.14
RFX3P48380 AC073592.4-201ENST00000623827 446 ntBASIC15.94■□□□□ 0.14
RFX3P48380 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
RFX3P48380 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.94■□□□□ 0.14
RFX3P48380 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
RFX3P48380 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.94■□□□□ 0.14
RFX3P48380 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX3P48380 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
RFX3P48380 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX3P48380 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX3P48380 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
RFX3P48380 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
RFX3P48380 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.93■□□□□ 0.14
RFX3P48380 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.93■□□□□ 0.14
RFX3P48380 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX3P48380 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.93■□□□□ 0.14
RFX3P48380 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.93■□□□□ 0.14
RFX3P48380 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.93■□□□□ 0.14
RFX3P48380 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.93■□□□□ 0.14
RFX3P48380 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
RFX3P48380 RN7SL510P-201ENST00000581311 263 ntBASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms