Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TM9SF3Q9HD45 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 LINC01451-201ENST00000623792 534 ntBASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 LINC00628-201ENST00000628516 1289 ntBASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TM9SF3Q9HD45 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AL355306.1-201ENST00000415580 579 ntBASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AC026120.1-201ENST00000611536 926 ntBASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 AD000864.1-201ENST00000624076 2295 ntBASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TM9SF3Q9HD45 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC140658.5-201ENST00000438532 169 ntBASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC107918.2-201ENST00000530817 355 ntBASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC093520.2-201ENST00000561830 333 ntBASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms