Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDH9Q9HC56 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDH9Q9HC56 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PCDH9Q9HC56 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.51■□□□□ 0.39
PCDH9Q9HC56 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 FAAHP1-202ENST00000446499 1238 ntBASIC17.51■□□□□ 0.39
PCDH9Q9HC56 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
PCDH9Q9HC56 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 AP002414.1-201ENST00000391405 1147 ntBASIC17.5■□□□□ 0.39
PCDH9Q9HC56 AC079781.3-201ENST00000449110 356 ntBASIC17.5■□□□□ 0.39
PCDH9Q9HC56 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 AC026691.1-201ENST00000602502 2017 ntBASIC17.5■□□□□ 0.39
PCDH9Q9HC56 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.5■□□□□ 0.39
PCDH9Q9HC56 AC097637.2-201ENST00000624096 1997 ntBASIC17.49■□□□□ 0.39
PCDH9Q9HC56 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 MTDHP4-201ENST00000600287 670 ntBASIC17.49■□□□□ 0.39
PCDH9Q9HC56 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 LINC00895-201ENST00000629028 1637 ntBASIC17.49■□□□□ 0.39
PCDH9Q9HC56 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PCDH9Q9HC56 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms