Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 PC-208ENST00000529047 1607 ntTSL 3 BASIC12.78□□□□□ -0.36
FOXA3P55318 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
FOXA3P55318 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC12.78□□□□□ -0.36
FOXA3P55318 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA3P55318 CCR12P-201ENST00000446203 998 ntBASIC12.78□□□□□ -0.36
FOXA3P55318 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 RPPH1-201ENST00000516869 333 ntBASIC12.78□□□□□ -0.36
FOXA3P55318 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 AC092865.7-201ENST00000641832 219 ntBASIC12.78□□□□□ -0.36
FOXA3P55318 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA3P55318 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.78□□□□□ -0.36
FOXA3P55318 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
FOXA3P55318 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
FOXA3P55318 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC12.77□□□□□ -0.36
FOXA3P55318 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC12.77□□□□□ -0.36
FOXA3P55318 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.77□□□□□ -0.36
FOXA3P55318 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
FOXA3P55318 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
FOXA3P55318 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA3P55318 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA3P55318 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 AC128676.1-201ENST00000454392 318 ntBASIC12.77□□□□□ -0.37
FOXA3P55318 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC12.77□□□□□ -0.37
FOXA3P55318 ADM-205ENST00000528544 586 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA3P55318 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC12.77□□□□□ -0.37
FOXA3P55318 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA3P55318 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
FOXA3P55318 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.77□□□□□ -0.37
FOXA3P55318 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.77□□□□□ -0.37
FOXA3P55318 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
FOXA3P55318 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
FOXA3P55318 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
FOXA3P55318 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC12.76□□□□□ -0.37
FOXA3P55318 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
FOXA3P55318 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC12.76□□□□□ -0.37
FOXA3P55318 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms