Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 AC093010.1-201ENST00000473625 1624 ntBASIC13.91□□□□□ -0.18
CDX1P47902 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.91□□□□□ -0.18
CDX1P47902 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.91□□□□□ -0.18
CDX1P47902 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.91□□□□□ -0.18
CDX1P47902 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.91□□□□□ -0.18
CDX1P47902 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 AL732292.2-201ENST00000609649 430 ntBASIC13.91□□□□□ -0.18
CDX1P47902 DBET-201ENST00000630918 3363 ntBASIC13.91□□□□□ -0.18
CDX1P47902 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
CDX1P47902 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CDX1P47902 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
CDX1P47902 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.91□□□□□ -0.18
CDX1P47902 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.9□□□□□ -0.18
CDX1P47902 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.9□□□□□ -0.18
CDX1P47902 UNC93B7-201ENST00000509439 705 ntBASIC13.9□□□□□ -0.18
CDX1P47902 DUTP2-201ENST00000519164 463 ntBASIC13.9□□□□□ -0.18
CDX1P47902 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.9□□□□□ -0.18
CDX1P47902 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 BNIP3P18-201ENST00000593976 575 ntBASIC13.9□□□□□ -0.18
CDX1P47902 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC13.9□□□□□ -0.18
CDX1P47902 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.9□□□□□ -0.18
CDX1P47902 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.9□□□□□ -0.18
CDX1P47902 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CDX1P47902 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC13.9□□□□□ -0.18
CDX1P47902 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.9□□□□□ -0.19
CDX1P47902 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.19
CDX1P47902 AC125634.1-201ENST00000438758 1403 ntBASIC13.9□□□□□ -0.19
CDX1P47902 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
CDX1P47902 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.89□□□□□ -0.19
CDX1P47902 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CDX1P47902 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CDX1P47902 AC132938.6-201ENST00000623828 1655 ntBASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms