Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 AC079776.2-201ENST00000641154 1609 ntBASIC16.33■□□□□ 0.2
VMP1Q96GC9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VMP1Q96GC9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VMP1Q96GC9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 AC003669.1-201ENST00000334569 611 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 KLF4P1-201ENST00000412782 1185 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 KRT18P67-201ENST00000432816 1264 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 FDX1P1-201ENST00000449115 551 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 AC009078.2-202ENST00000463353 338 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 AL138688.1-201ENST00000624851 1594 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
VMP1Q96GC9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.32■□□□□ 0.2
VMP1Q96GC9 AC106886.4-201ENST00000623557 2502 ntBASIC16.32■□□□□ 0.2
VMP1Q96GC9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SIGLEC16-201ENST00000599858 1437 ntBASIC16.31■□□□□ 0.2
VMP1Q96GC9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SART3-203ENST00000546611 1184 ntBASIC16.31■□□□□ 0.2
VMP1Q96GC9 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SLC25A6P4-201ENST00000586535 553 ntBASIC16.31■□□□□ 0.2
VMP1Q96GC9 AC073592.4-201ENST00000623827 446 ntBASIC16.31■□□□□ 0.2
VMP1Q96GC9 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms