Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC116Q8IYX3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 AC079328.2-201ENST00000561241 3354 ntBASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 AC006557.2-201ENST00000592985 1240 ntBASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC116Q8IYX3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 AC078925.2-201ENST00000624013 1973 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 TUBB8P12-201ENST00000308911 1335 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 TUBB7P-202ENST00000428444 1305 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 TUBB8P7-204ENST00000567960 1332 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 PI4KAP1-204ENST00000612579 1703 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 HNRNPDP1-201ENST00000439535 754 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MOK-208ENST00000519058 917 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC116Q8IYX3 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
CCDC116Q8IYX3 AL021920.2-201ENST00000624828 1351 ntBASIC16■□□□□ 0.15
CCDC116Q8IYX3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC116Q8IYX3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms