Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AC010327.5-201ENST00000586923 3061 ntBASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AC098934.4-201ENST00000564127 592 ntBASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC28AQ8IWP9 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 PID1-202ENST00000392054 2745 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MTHFR-217ENST00000641820 1569 ntBASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 AC041040.2-201ENST00000622926 2899 ntBASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 AL121829.2-201ENST00000620908 328 ntBASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 HLA-J-201ENST00000462773 1622 ntBASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC28AQ8IWP9 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.21□□□□□ -0.13
CCDC28AQ8IWP9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms