Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CHRNA4P43681 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CHRNA4P43681 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CHRNA4P43681 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.12■□□□□ 0.33
CHRNA4P43681 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.12■□□□□ 0.33
CHRNA4P43681 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.12■□□□□ 0.33
CHRNA4P43681 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.12■□□□□ 0.33
CHRNA4P43681 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.12■□□□□ 0.33
CHRNA4P43681 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CHRNA4P43681 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.12■□□□□ 0.33
CHRNA4P43681 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CHRNA4P43681 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.12■□□□□ 0.33
CHRNA4P43681 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CHRNA4P43681 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.11■□□□□ 0.33
CHRNA4P43681 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 AL603756.1-201ENST00000606511 2163 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.11■□□□□ 0.33
CHRNA4P43681 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.11■□□□□ 0.33
CHRNA4P43681 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.11■□□□□ 0.33
CHRNA4P43681 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.11■□□□□ 0.33
CHRNA4P43681 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 AC008667.4-201ENST00000607370 168 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.11■□□□□ 0.33
CHRNA4P43681 AC116407.3-201ENST00000623905 1129 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.11■□□□□ 0.33
CHRNA4P43681 HLA-A-201ENST00000376802 1334 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 AL021920.2-201ENST00000624828 1351 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.11■□□□□ 0.33
CHRNA4P43681 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 KRT8P49-201ENST00000604166 1432 ntBASIC17.11■□□□□ 0.33
CHRNA4P43681 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.11■□□□□ 0.33
CHRNA4P43681 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CHRNA4P43681 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CHRNA4P43681 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CHRNA4P43681 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CHRNA4P43681 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 RPS2P28-201ENST00000314255 741 ntBASIC17.1■□□□□ 0.33
CHRNA4P43681 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.1■□□□□ 0.33
CHRNA4P43681 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.1■□□□□ 0.33
CHRNA4P43681 IGHV3-65-201ENST00000523210 341 ntBASIC17.1■□□□□ 0.33
CHRNA4P43681 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CHRNA4P43681 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.1■□□□□ 0.33
CHRNA4P43681 AP001005.1-201ENST00000571755 1248 ntBASIC17.1■□□□□ 0.33
CHRNA4P43681 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.1■□□□□ 0.33
CHRNA4P43681 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.1■□□□□ 0.33
CHRNA4P43681 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.1■□□□□ 0.33
CHRNA4P43681 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms