Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.65■■□□□ 1.06
SHANK3Q9BYB0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC21.64■■□□□ 1.06
SHANK3Q9BYB0 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SHANK3Q9BYB0 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 PTPA-220ENST00000436883 532 ntTSL 4 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AC135586.1-201ENST00000539323 574 ntBASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 SNX29P1-201ENST00000548357 1007 ntBASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 BTBD7P1-201ENST00000447253 1453 ntBASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SHANK3Q9BYB0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 AL391825.1-201ENST00000457671 1364 ntBASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 DFFBP1-201ENST00000433250 979 ntBASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 AC008494.3-201ENST00000606615 944 ntBASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SHANK3Q9BYB0 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 AP006294.1-201ENST00000415407 339 ntBASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 AC093724.1-201ENST00000448659 1027 ntBASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 INE1-201ENST00000456273 945 ntBASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 CHCHD2P3-201ENST00000603038 451 ntBASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SHANK3Q9BYB0 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SHANK3Q9BYB0 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms