Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AC211486.1-202ENST00000416371 468 ntBASIC15.8■□□□□ 0.12
BEST3Q8N1M1 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AC211476.1-201ENST00000503899 468 ntBASIC15.8■□□□□ 0.12
BEST3Q8N1M1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 KRT19P2-202ENST00000557173 1012 ntBASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AC005829.1-201ENST00000570002 483 ntBASIC15.8■□□□□ 0.12
BEST3Q8N1M1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AC079781.4-201ENST00000641908 219 ntBASIC15.8■□□□□ 0.12
BEST3Q8N1M1 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
BEST3Q8N1M1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 RHOQP3-201ENST00000437982 621 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PAWRP1-201ENST00000451083 565 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 CXCL1P1-201ENST00000502804 216 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PDPK2P-202ENST00000562415 1191 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 AL078644.1-201ENST00000609881 752 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BEST3Q8N1M1 AC084018.2-201ENST00000613093 2607 ntBASIC15.79■□□□□ 0.12
BEST3Q8N1M1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AC025580.3-201ENST00000617932 1424 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AC087163.2-201ENST00000457299 853 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 MIR4469-201ENST00000583919 79 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AP001160.2-201ENST00000596071 487 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AC023141.13-201ENST00000604991 943 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 C20orf181-201ENST00000623918 480 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 AC007064.4-201ENST00000637740 555 ntBASIC15.78■□□□□ 0.12
BEST3Q8N1M1 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BEST3Q8N1M1 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms