Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.42■□□□□ 0.54
RNF40O75150 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
RNF40O75150 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.42■□□□□ 0.54
RNF40O75150 AC139887.3-201ENST00000568585 713 ntBASIC18.42■□□□□ 0.54
RNF40O75150 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.42■□□□□ 0.54
RNF40O75150 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
RNF40O75150 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.42■□□□□ 0.54
RNF40O75150 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
RNF40O75150 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
RNF40O75150 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RNF40O75150 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.41■□□□□ 0.54
RNF40O75150 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.41■□□□□ 0.54
RNF40O75150 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RNF40O75150 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 RBM17P3-201ENST00000417687 1192 ntBASIC18.41■□□□□ 0.54
RNF40O75150 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF40O75150 AC092865.5-201ENST00000545435 363 ntBASIC18.41■□□□□ 0.54
RNF40O75150 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF40O75150 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 AP001269.4-201ENST00000609611 512 ntBASIC18.41■□□□□ 0.54
RNF40O75150 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF40O75150 FAM215A-202ENST00000632077 792 ntBASIC18.41■□□□□ 0.54
RNF40O75150 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.41■□□□□ 0.54
RNF40O75150 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 LINC00304-203ENST00000565008 1864 ntBASIC18.41■□□□□ 0.54
RNF40O75150 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.41■□□□□ 0.54
RNF40O75150 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RNF40O75150 AC132872.4-202ENST00000622924 2756 ntBASIC18.41■□□□□ 0.54
RNF40O75150 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
RNF40O75150 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 SDHAP2-201ENST00000455183 2001 ntBASIC18.4■□□□□ 0.54
RNF40O75150 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF40O75150 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 AL024508.2-201ENST00000607749 1894 ntBASIC18.4■□□□□ 0.54
RNF40O75150 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF40O75150 MIR940-201ENST00000401276 94 ntBASIC18.4■□□□□ 0.54
RNF40O75150 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.4■□□□□ 0.54
RNF40O75150 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.4■□□□□ 0.54
RNF40O75150 RPL13AP23-201ENST00000480739 586 ntBASIC18.4■□□□□ 0.54
RNF40O75150 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.4■□□□□ 0.54
RNF40O75150 AC009533.2-201ENST00000543664 586 ntBASIC18.4■□□□□ 0.54
RNF40O75150 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.4■□□□□ 0.54
RNF40O75150 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.4■□□□□ 0.54
RNF40O75150 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RNF40O75150 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.4■□□□□ 0.54
RNF40O75150 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RNF40O75150 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms