Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.19■□□□□ 0.5
FOXN3O00409 RNPS1P1-201ENST00000507437 918 ntBASIC18.19■□□□□ 0.5
FOXN3O00409 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 AP002490.2-201ENST00000524791 560 ntBASIC18.19■□□□□ 0.5
FOXN3O00409 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.19■□□□□ 0.5
FOXN3O00409 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.19■□□□□ 0.5
FOXN3O00409 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXN3O00409 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
FOXN3O00409 TP73-AS1-207ENST00000624167 988 ntBASIC18.19■□□□□ 0.5
FOXN3O00409 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
FOXN3O00409 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
FOXN3O00409 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.19■□□□□ 0.5
FOXN3O00409 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 GCK-202ENST00000345378 2421 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 ELK2BP-201ENST00000415014 1224 ntBASIC18.18■□□□□ 0.5
FOXN3O00409 LAGE3P1-201ENST00000425356 484 ntBASIC18.18■□□□□ 0.5
FOXN3O00409 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.18■□□□□ 0.5
FOXN3O00409 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.18■□□□□ 0.5
FOXN3O00409 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.18■□□□□ 0.5
FOXN3O00409 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.18■□□□□ 0.5
FOXN3O00409 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
FOXN3O00409 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.18■□□□□ 0.5
FOXN3O00409 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 LINC00895-201ENST00000629028 1637 ntBASIC18.17■□□□□ 0.5
FOXN3O00409 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
FOXN3O00409 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
FOXN3O00409 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.17■□□□□ 0.5
FOXN3O00409 HNRNPDP1-201ENST00000439535 754 ntBASIC18.17■□□□□ 0.5
FOXN3O00409 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.17■□□□□ 0.5
FOXN3O00409 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
FOXN3O00409 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
FOXN3O00409 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
FOXN3O00409 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 PI4KAP1-204ENST00000612579 1703 ntBASIC18.17■□□□□ 0.5
FOXN3O00409 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
FOXN3O00409 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
FOXN3O00409 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
FOXN3O00409 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms