Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.99■□□□□ 0.31
TTC28Q96AY4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
TTC28Q96AY4 KRT8P22-201ENST00000562317 1415 ntBASIC16.99■□□□□ 0.31
TTC28Q96AY4 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.98■□□□□ 0.31
TTC28Q96AY4 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.98■□□□□ 0.31
TTC28Q96AY4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 AC005695.3-201ENST00000614522 232 ntBASIC16.98■□□□□ 0.31
TTC28Q96AY4 AL136301.1-201ENST00000615830 422 ntBASIC16.98■□□□□ 0.31
TTC28Q96AY4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.98■□□□□ 0.31
TTC28Q96AY4 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.98■□□□□ 0.31
TTC28Q96AY4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TTC28Q96AY4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 RN7SL720P-201ENST00000488178 304 ntBASIC16.97■□□□□ 0.31
TTC28Q96AY4 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 TDH-203ENST00000531764 1110 ntBASIC16.97■□□□□ 0.31
TTC28Q96AY4 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TTC28Q96AY4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.97■□□□□ 0.31
TTC28Q96AY4 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 FNTAP2-201ENST00000430308 634 ntBASIC16.96■□□□□ 0.31
TTC28Q96AY4 Z93015.1-201ENST00000451718 390 ntBASIC16.96■□□□□ 0.31
TTC28Q96AY4 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TTC28Q96AY4 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC16.96■□□□□ 0.31
TTC28Q96AY4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms