Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC65Q8IXS2 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC65Q8IXS2 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
CCDC65Q8IXS2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC65Q8IXS2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PI4KAP1-204ENST00000612579 1703 ntBASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PCDHB17P-201ENST00000539533 2393 ntBASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 RPS2P28-201ENST00000314255 741 ntBASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 AL031008.1-201ENST00000619963 541 ntBASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 AC008735.5-201ENST00000623544 497 ntBASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC65Q8IXS2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 HNRNPDP1-201ENST00000439535 754 ntBASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 AC136632.2-201ENST00000512891 861 ntBASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
CCDC65Q8IXS2 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 AC073621.1-201ENST00000392730 636 ntBASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 RPS15P9-201ENST00000494093 319 ntBASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC65Q8IXS2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms