Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RC3H1Q5TC82 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RC3H1Q5TC82 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RC3H1Q5TC82 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RC3H1Q5TC82 AC073439.1-201ENST00000624121 1774 ntBASIC21.18■□□□□ 0.98
RC3H1Q5TC82 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CENPM-206ENST00000407253 818 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 GIMAP3P-201ENST00000495150 836 ntBASIC21.17■□□□□ 0.98
RC3H1Q5TC82 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 AC104794.3-201ENST00000566840 1248 ntBASIC21.17■□□□□ 0.98
RC3H1Q5TC82 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 AL391825.1-201ENST00000457671 1364 ntBASIC21.17■□□□□ 0.98
RC3H1Q5TC82 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.17■□□□□ 0.98
RC3H1Q5TC82 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AC116353.5-201ENST00000638148 1699 ntBASIC21.16■□□□□ 0.98
RC3H1Q5TC82 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 DGCR5-201ENST00000399539 862 ntBASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AL080243.2-201ENST00000418783 582 ntBASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AL079307.3-201ENST00000556114 283 ntBASIC21.16■□□□□ 0.98
RC3H1Q5TC82 IFT20-216ENST00000588477 774 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 IGHV3-72-202ENST00000621503 303 ntBASIC21.16■□□□□ 0.98
RC3H1Q5TC82 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RC3H1Q5TC82 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AC108860.2-201ENST00000562760 2183 ntBASIC21.15■□□□□ 0.98
RC3H1Q5TC82 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AC135586.1-201ENST00000539323 574 ntBASIC21.15■□□□□ 0.98
RC3H1Q5TC82 AC010336.2-201ENST00000564226 506 ntBASIC21.15■□□□□ 0.98
RC3H1Q5TC82 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.15■□□□□ 0.98
RC3H1Q5TC82 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RC3H1Q5TC82 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
RC3H1Q5TC82 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RC3H1Q5TC82 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RC3H1Q5TC82 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RC3H1Q5TC82 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms