Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.56■□□□□ 0.88
COL4A1P02462 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.56■□□□□ 0.88
COL4A1P02462 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.56■□□□□ 0.88
COL4A1P02462 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 AC073592.8-201ENST00000624126 511 ntBASIC20.56■□□□□ 0.88
COL4A1P02462 AC073439.1-201ENST00000624121 1774 ntBASIC20.56■□□□□ 0.88
COL4A1P02462 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COL4A1P02462 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL4A1P02462 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL4A1P02462 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
COL4A1P02462 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A1P02462 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A1P02462 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A1P02462 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
COL4A1P02462 AC005225.4-201ENST00000557330 545 ntBASIC20.55■□□□□ 0.88
COL4A1P02462 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A1P02462 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL4A1P02462 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL4A1P02462 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A1P02462 TERF1P3-201ENST00000505638 1227 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.54■□□□□ 0.88
COL4A1P02462 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A1P02462 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 PCDHB17P-201ENST00000539533 2393 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A1P02462 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
COL4A1P02462 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 AL080243.2-201ENST00000418783 582 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 AC009477.1-201ENST00000452936 217 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A1P02462 SPDYE22P-201ENST00000582158 798 ntBASIC20.54■□□□□ 0.88
COL4A1P02462 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.54■□□□□ 0.88
COL4A1P02462 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A1P02462 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A1P02462 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A1P02462 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20.53■□□□□ 0.88
COL4A1P02462 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
COL4A1P02462 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
COL4A1P02462 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A1P02462 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A1P02462 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A1P02462 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.53■□□□□ 0.88
COL4A1P02462 AC241585.1-201ENST00000433527 519 ntBASIC20.53■□□□□ 0.88
COL4A1P02462 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A1P02462 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL4A1P02462 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A1P02462 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms