Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AL355385.1-201ENST00000606123 409 ntBASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 GGTLC5P-201ENST00000617623 998 ntBASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 FLJ38576-201ENST00000623820 2459 ntBASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TMX2-CTNND1H3BSU7 CROCCP2-202ENST00000412962 2773 ntBASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 ELK2BP-201ENST00000415014 1224 ntBASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 KRT18P2-201ENST00000447938 1258 ntBASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 AC108073.2-201ENST00000464002 357 ntBASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TMX2-CTNND1H3BSU7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
TMX2-CTNND1H3BSU7 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AL513477.1-201ENST00000602865 2407 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 GPR89P-201ENST00000407924 1495 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 MYCLP1-201ENST00000372451 1075 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 MRPL20P1-201ENST00000400819 433 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 DDX43P3-201ENST00000441064 443 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 STK19B-204ENST00000512515 211 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AC027796.2-201ENST00000575326 344 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AC010654.1-201ENST00000615722 808 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AL805961.1-202ENST00000641562 540 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 AC090340.1-201ENST00000620778 4980 ntBASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TMX2-CTNND1H3BSU7 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms