Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 AC098831.1-202ENST00000438821 336 ntBASIC16.56■□□□□ 0.24
VPS4AQ9UN37 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 AC132008.2-207ENST00000454517 770 ntBASIC16.56■□□□□ 0.24
VPS4AQ9UN37 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 SCARNA2-201ENST00000458748 420 ntBASIC16.56■□□□□ 0.24
VPS4AQ9UN37 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 LINC02084-201ENST00000606069 1096 ntBASIC16.56■□□□□ 0.24
VPS4AQ9UN37 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VPS4AQ9UN37 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 COX5BP2-201ENST00000392354 334 ntBASIC16.55■□□□□ 0.24
VPS4AQ9UN37 AC018712.1-201ENST00000455767 687 ntBASIC16.55■□□□□ 0.24
VPS4AQ9UN37 AC091607.1-201ENST00000490318 1060 ntBASIC16.55■□□□□ 0.24
VPS4AQ9UN37 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 MIR3687-2-201ENST00000577708 61 ntBASIC16.55■□□□□ 0.24
VPS4AQ9UN37 MIR3687-1-201ENST00000614492 61 ntBASIC16.55■□□□□ 0.24
VPS4AQ9UN37 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS4AQ9UN37 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 MYCLP1-201ENST00000372451 1075 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC140113.2-201ENST00000604370 208 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC027601.4-201ENST00000611259 610 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 MIR7706-201ENST00000613747 67 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC114341.1-201ENST00000618070 349 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 AC010460.3-201ENST00000511359 1579 ntBASIC16.54■□□□□ 0.24
VPS4AQ9UN37 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS4AQ9UN37 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms