Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 CRB3P1-201ENST00000449338 276 ntBASIC16.4■□□□□ 0.22
COL28A1Q2UY09 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 AC084346.2-201ENST00000607097 949 ntBASIC16.4■□□□□ 0.22
COL28A1Q2UY09 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.4■□□□□ 0.22
COL28A1Q2UY09 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
COL28A1Q2UY09 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL28A1Q2UY09 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
COL28A1Q2UY09 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 AL627223.1-201ENST00000416693 442 ntBASIC16.39■□□□□ 0.21
COL28A1Q2UY09 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.39■□□□□ 0.21
COL28A1Q2UY09 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 AD001527.2-201ENST00000622994 785 ntBASIC16.39■□□□□ 0.21
COL28A1Q2UY09 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
COL28A1Q2UY09 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL28A1Q2UY09 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms