Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.03□□□□□ -0.48
CKS1BP61024 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC12.03□□□□□ -0.48
CKS1BP61024 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 AC008687.5-201ENST00000593746 558 ntBASIC12.03□□□□□ -0.48
CKS1BP61024 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 SRI-203ENST00000419179 1307 ntTSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
CKS1BP61024 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CKS1BP61024 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
CKS1BP61024 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS1BP61024 AC138035.3-201ENST00000622706 2791 ntBASIC12.02□□□□□ -0.48
CKS1BP61024 BANP-227ENST00000626016 2144 ntTSL 2 BASIC12.02□□□□□ -0.48
CKS1BP61024 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC12.02□□□□□ -0.48
CKS1BP61024 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS1BP61024 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC12.02□□□□□ -0.48
CKS1BP61024 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
CKS1BP61024 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC12.02□□□□□ -0.48
CKS1BP61024 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
CKS1BP61024 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
CKS1BP61024 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC12.02□□□□□ -0.49
CKS1BP61024 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC12.02□□□□□ -0.49
CKS1BP61024 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC12.02□□□□□ -0.49
CKS1BP61024 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 NUDT16P1-203ENST00000513809 620 ntBASIC12.02□□□□□ -0.49
CKS1BP61024 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.02□□□□□ -0.49
CKS1BP61024 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC12.02□□□□□ -0.49
CKS1BP61024 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 MMD2-204ENST00000612910 778 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 AC116407.2-201ENST00000613639 860 ntBASIC12.02□□□□□ -0.49
CKS1BP61024 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 AL355312.1-201ENST00000407115 2176 ntBASIC12.02□□□□□ -0.49
CKS1BP61024 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC12.02□□□□□ -0.49
CKS1BP61024 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CKS1BP61024 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CKS1BP61024 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC12.01□□□□□ -0.49
CKS1BP61024 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC12.01□□□□□ -0.49
CKS1BP61024 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CKS1BP61024 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC12.01□□□□□ -0.49
CKS1BP61024 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms