Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC20.39■□□□□ 0.85
BRCA1P38398 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.39■□□□□ 0.85
BRCA1P38398 AC108725.1-201ENST00000495472 409 ntBASIC20.39■□□□□ 0.85
BRCA1P38398 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 AC093726.1-201ENST00000608064 963 ntBASIC20.39■□□□□ 0.85
BRCA1P38398 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
BRCA1P38398 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
BRCA1P38398 AC073130.3-201ENST00000624389 2278 ntBASIC20.39■□□□□ 0.85
BRCA1P38398 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
BRCA1P38398 TUBB1P2-201ENST00000422712 1306 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 TUBB1P1-201ENST00000503144 1300 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.38■□□□□ 0.85
BRCA1P38398 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 PDIA3P1-201ENST00000471856 1510 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC20.38■□□□□ 0.85
BRCA1P38398 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.38■□□□□ 0.85
BRCA1P38398 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
BRCA1P38398 AC138028.4-201ENST00000564984 1845 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
BRCA1P38398 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC20.38■□□□□ 0.85
BRCA1P38398 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.38■□□□□ 0.85
BRCA1P38398 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.38■□□□□ 0.85
BRCA1P38398 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.38■□□□□ 0.85
BRCA1P38398 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC20.38■□□□□ 0.85
BRCA1P38398 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.38■□□□□ 0.85
BRCA1P38398 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.38■□□□□ 0.85
BRCA1P38398 MIR6869-201ENST00000619434 62 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
BRCA1P38398 KRT8P49-201ENST00000604166 1432 ntBASIC20.38■□□□□ 0.85
BRCA1P38398 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC20.38■□□□□ 0.85
BRCA1P38398 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.38■□□□□ 0.85
BRCA1P38398 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.37■□□□□ 0.85
BRCA1P38398 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.37■□□□□ 0.85
BRCA1P38398 ZNF767P-206ENST00000513792 565 ntBASIC20.37■□□□□ 0.85
BRCA1P38398 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.37■□□□□ 0.85
BRCA1P38398 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 AL391069.4-201ENST00000609583 481 ntBASIC20.37■□□□□ 0.85
BRCA1P38398 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.37■□□□□ 0.85
BRCA1P38398 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 BOLA2P3-201ENST00000404566 256 ntBASIC20.37■□□□□ 0.85
BRCA1P38398 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC20.37■□□□□ 0.85
BRCA1P38398 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
BRCA1P38398 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.37■□□□□ 0.85
BRCA1P38398 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC20.37■□□□□ 0.85
BRCA1P38398 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.37■□□□□ 0.85
BRCA1P38398 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 AC244093.1-201ENST00000610837 814 ntBASIC20.37■□□□□ 0.85
BRCA1P38398 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.37■□□□□ 0.85
BRCA1P38398 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
BRCA1P38398 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
BRCA1P38398 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.36■□□□□ 0.85
BRCA1P38398 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.36■□□□□ 0.85
BRCA1P38398 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.36■□□□□ 0.85
BRCA1P38398 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20.36■□□□□ 0.85
BRCA1P38398 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC20.36■□□□□ 0.85
BRCA1P38398 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.36■□□□□ 0.85
BRCA1P38398 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.36■□□□□ 0.85
BRCA1P38398 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
BRCA1P38398 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BRCA1P38398 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC20.35■□□□□ 0.85
BRCA1P38398 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BRCA1P38398 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.35■□□□□ 0.85
BRCA1P38398 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms