Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 AL355001.2-201ENST00000620617 1191 ntBASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CPT2-209ENST00000636935 803 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 CICP23-201ENST00000605013 2741 ntBASIC10.62□□□□□ -0.71
LINC00643Q86TS7 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 AC005912.2-201ENST00000619492 2400 ntBASIC10.62□□□□□ -0.71
LINC00643Q86TS7 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 HES2-205ENST00000487437 968 ntTSL 3 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 BRWD1-AS2-201ENST00000603064 1028 ntBASIC10.62□□□□□ -0.71
LINC00643Q86TS7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 REXO1L11P-201ENST00000620964 1927 ntBASIC10.62□□□□□ -0.71
LINC00643Q86TS7 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
LINC00643Q86TS7 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ME2P1-201ENST00000426028 1970 ntBASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms