Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HNF4AP41235 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.6■□□□□ 0.25
HNF4AP41235 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.6■□□□□ 0.25
HNF4AP41235 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HNF4AP41235 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HNF4AP41235 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 PRYP5-201ENST00000451909 266 ntBASIC16.59■□□□□ 0.25
HNF4AP41235 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.59■□□□□ 0.25
HNF4AP41235 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.59■□□□□ 0.25
HNF4AP41235 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 RN7SL510P-201ENST00000581311 263 ntBASIC16.59■□□□□ 0.25
HNF4AP41235 NKAPP1-205ENST00000585790 367 ntBASIC16.59■□□□□ 0.25
HNF4AP41235 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
HNF4AP41235 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HNF4AP41235 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HNF4AP41235 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HNF4AP41235 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.59■□□□□ 0.25
HNF4AP41235 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.59■□□□□ 0.25
HNF4AP41235 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HNF4AP41235 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
HNF4AP41235 AC097637.2-201ENST00000624096 1997 ntBASIC16.58■□□□□ 0.25
HNF4AP41235 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HNF4AP41235 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
HNF4AP41235 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HNF4AP41235 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.58■□□□□ 0.25
HNF4AP41235 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
HNF4AP41235 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.58■□□□□ 0.25
HNF4AP41235 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.58■□□□□ 0.25
HNF4AP41235 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
HNF4AP41235 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.58■□□□□ 0.24
HNF4AP41235 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.58■□□□□ 0.24
HNF4AP41235 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.58■□□□□ 0.24
HNF4AP41235 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.58■□□□□ 0.24
HNF4AP41235 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.58■□□□□ 0.24
HNF4AP41235 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 AL355877.3-201ENST00000622820 899 ntBASIC16.58■□□□□ 0.24
HNF4AP41235 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.58■□□□□ 0.24
HNF4AP41235 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 AL356309.3-201ENST00000624132 1934 ntBASIC16.58■□□□□ 0.24
HNF4AP41235 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
HNF4AP41235 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
HNF4AP41235 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.58■□□□□ 0.24
HNF4AP41235 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.58■□□□□ 0.24
HNF4AP41235 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HNF4AP41235 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
HNF4AP41235 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
HNF4AP41235 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HNF4AP41235 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms