Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.85■□□□□ 0.77
CDKL5O76039 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.85■□□□□ 0.77
CDKL5O76039 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.85■□□□□ 0.77
CDKL5O76039 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.85■□□□□ 0.77
CDKL5O76039 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.85■□□□□ 0.77
CDKL5O76039 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.85■□□□□ 0.77
CDKL5O76039 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.85■□□□□ 0.77
CDKL5O76039 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.85■□□□□ 0.77
CDKL5O76039 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.85■□□□□ 0.77
CDKL5O76039 DUX4L17-201ENST00000557360 1267 ntBASIC19.85■□□□□ 0.77
CDKL5O76039 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.85■□□□□ 0.77
CDKL5O76039 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CDKL5O76039 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CDKL5O76039 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.85■□□□□ 0.77
CDKL5O76039 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CDKL5O76039 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.85■□□□□ 0.77
CDKL5O76039 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.85■□□□□ 0.77
CDKL5O76039 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.84■□□□□ 0.77
CDKL5O76039 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.84■□□□□ 0.77
CDKL5O76039 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.84■□□□□ 0.77
CDKL5O76039 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
CDKL5O76039 AL121912.1-201ENST00000603683 238 ntBASIC19.84■□□□□ 0.77
CDKL5O76039 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
CDKL5O76039 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.84■□□□□ 0.77
CDKL5O76039 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDKL5O76039 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.84■□□□□ 0.77
CDKL5O76039 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC19.84■□□□□ 0.77
CDKL5O76039 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDKL5O76039 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
CDKL5O76039 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.83■□□□□ 0.77
CDKL5O76039 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CDKL5O76039 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.83■□□□□ 0.77
CDKL5O76039 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDKL5O76039 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.83■□□□□ 0.77
CDKL5O76039 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.83■□□□□ 0.77
CDKL5O76039 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.83■□□□□ 0.77
CDKL5O76039 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.83■□□□□ 0.77
CDKL5O76039 EMBP1-201ENST00000458200 901 ntBASIC19.83■□□□□ 0.77
CDKL5O76039 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.83■□□□□ 0.77
CDKL5O76039 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.83■□□□□ 0.77
CDKL5O76039 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.83■□□□□ 0.77
CDKL5O76039 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CDKL5O76039 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CDKL5O76039 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CDKL5O76039 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CDKL5O76039 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.82■□□□□ 0.76
CDKL5O76039 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.82■□□□□ 0.76
CDKL5O76039 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.82■□□□□ 0.76
CDKL5O76039 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDKL5O76039 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.82■□□□□ 0.76
CDKL5O76039 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.82■□□□□ 0.76
CDKL5O76039 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.82■□□□□ 0.76
CDKL5O76039 OR7E14P-202ENST00000530490 1290 ntBASIC19.82■□□□□ 0.76
CDKL5O76039 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.82■□□□□ 0.76
CDKL5O76039 AL805961.1-202ENST00000641562 540 ntBASIC19.82■□□□□ 0.76
CDKL5O76039 AF228730.7-201ENST00000641842 219 ntBASIC19.82■□□□□ 0.76
CDKL5O76039 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms