Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
BDNFP23560 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BDNFP23560 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18■□□□□ 0.47
BDNFP23560 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.99■□□□□ 0.47
BDNFP23560 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
BDNFP23560 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.99■□□□□ 0.47
BDNFP23560 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.99■□□□□ 0.47
BDNFP23560 AC139713.2-201ENST00000641328 2723 ntBASIC17.99■□□□□ 0.47
BDNFP23560 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
BDNFP23560 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.99■□□□□ 0.47
BDNFP23560 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
BDNFP23560 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
BDNFP23560 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 PDPK2P-202ENST00000562415 1191 ntBASIC17.99■□□□□ 0.47
BDNFP23560 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.99■□□□□ 0.47
BDNFP23560 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BDNFP23560 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
BDNFP23560 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.98■□□□□ 0.47
BDNFP23560 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.98■□□□□ 0.47
BDNFP23560 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 AC106820.2-201ENST00000563775 3264 ntBASIC17.98■□□□□ 0.47
BDNFP23560 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.98■□□□□ 0.47
BDNFP23560 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.98■□□□□ 0.47
BDNFP23560 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.98■□□□□ 0.47
BDNFP23560 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.98■□□□□ 0.47
BDNFP23560 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.98■□□□□ 0.47
BDNFP23560 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.98■□□□□ 0.47
BDNFP23560 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.98■□□□□ 0.47
BDNFP23560 REXO1L3P-201ENST00000622202 1288 ntBASIC17.98■□□□□ 0.47
BDNFP23560 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.98■□□□□ 0.47
BDNFP23560 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.98■□□□□ 0.47
BDNFP23560 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.98■□□□□ 0.47
BDNFP23560 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.98■□□□□ 0.47
BDNFP23560 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.98■□□□□ 0.47
BDNFP23560 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
BDNFP23560 FRMD8P1-201ENST00000440433 1524 ntBASIC17.98■□□□□ 0.47
BDNFP23560 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
BDNFP23560 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.97■□□□□ 0.47
BDNFP23560 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.97■□□□□ 0.47
BDNFP23560 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.97■□□□□ 0.47
BDNFP23560 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.97■□□□□ 0.47
BDNFP23560 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.97■□□□□ 0.47
BDNFP23560 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
BDNFP23560 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.97■□□□□ 0.47
BDNFP23560 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms