Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.36■■□□□ 1.17
COL3A1P02461 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
COL3A1P02461 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.36■■□□□ 1.17
COL3A1P02461 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC22.36■■□□□ 1.17
COL3A1P02461 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL3A1P02461 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 AL139400.1-201ENST00000366220 510 ntBASIC22.35■■□□□ 1.17
COL3A1P02461 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 PMS2P4-201ENST00000412466 1052 ntBASIC22.35■■□□□ 1.17
COL3A1P02461 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 AL627223.1-201ENST00000416693 442 ntBASIC22.35■■□□□ 1.17
COL3A1P02461 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC22.35■■□□□ 1.17
COL3A1P02461 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC22.35■■□□□ 1.17
COL3A1P02461 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
COL3A1P02461 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC22.35■■□□□ 1.17
COL3A1P02461 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC22.35■■□□□ 1.17
COL3A1P02461 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
COL3A1P02461 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
COL3A1P02461 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
COL3A1P02461 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 WASH6P-202ENST00000359512 1437 ntBASIC22.35■■□□□ 1.17
COL3A1P02461 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC22.35■■□□□ 1.17
COL3A1P02461 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
COL3A1P02461 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC22.35■■□□□ 1.17
COL3A1P02461 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 FOXO1B-201ENST00000504678 1527 ntBASIC22.35■■□□□ 1.17
COL3A1P02461 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
COL3A1P02461 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
COL3A1P02461 GPS2P2-201ENST00000430745 888 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 RN7SL589P-201ENST00000481268 310 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 AC079140.1-201ENST00000508039 487 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.34■■□□□ 1.17
COL3A1P02461 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 AC026120.1-201ENST00000611536 926 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 AMT-206ENST00000458307 1860 ntTSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 AKAP8P1-201ENST00000434743 1349 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 BSG-215ENST00000618006 1329 ntTSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 AC105020.1-201ENST00000435356 2205 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
COL3A1P02461 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 TIMM8BP1-201ENST00000452384 211 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC22.34■■□□□ 1.17
COL3A1P02461 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
COL3A1P02461 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC22.34■■□□□ 1.17
COL3A1P02461 AL139011.1-202ENST00000642063 584 ntBASIC22.34■■□□□ 1.17
COL3A1P02461 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC22.34■■□□□ 1.17
COL3A1P02461 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC22.33■■□□□ 1.17
COL3A1P02461 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
COL3A1P02461 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
COL3A1P02461 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC22.33■■□□□ 1.17
COL3A1P02461 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
COL3A1P02461 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22.33■■□□□ 1.17
COL3A1P02461 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
COL3A1P02461 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC22.33■■□□□ 1.16
COL3A1P02461 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC22.33■■□□□ 1.16
COL3A1P02461 TFAMP1-201ENST00000412727 736 ntBASIC22.33■■□□□ 1.16
COL3A1P02461 SPCS2P4-201ENST00000436160 681 ntBASIC22.33■■□□□ 1.16
COL3A1P02461 AC023141.5-201ENST00000458585 616 ntBASIC22.33■■□□□ 1.16
COL3A1P02461 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC22.33■■□□□ 1.16
COL3A1P02461 METTL23-205ENST00000588302 925 ntTSL 5 BASIC22.33■■□□□ 1.16
COL3A1P02461 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
COL3A1P02461 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.33■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms