Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 RN7SL606P-201ENST00000472779 293 ntBASIC16.63■□□□□ 0.25
VPS4AQ9UN37 AC068472.1-201ENST00000474589 881 ntBASIC16.63■□□□□ 0.25
VPS4AQ9UN37 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4AQ9UN37 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC008608.2-201ENST00000606089 416 ntBASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AL139424.1-201ENST00000607572 797 ntBASIC16.62■□□□□ 0.25
VPS4AQ9UN37 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC079328.2-201ENST00000561241 3354 ntBASIC16.62■□□□□ 0.25
VPS4AQ9UN37 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 AC243591.1-201ENST00000452967 1364 ntBASIC16.62■□□□□ 0.25
VPS4AQ9UN37 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4AQ9UN37 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 AC096633.1-201ENST00000422446 749 ntBASIC16.61■□□□□ 0.25
VPS4AQ9UN37 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 MIR5100-201ENST00000579544 119 ntBASIC16.61■□□□□ 0.25
VPS4AQ9UN37 AL139327.4-201ENST00000612362 153 ntBASIC16.61■□□□□ 0.25
VPS4AQ9UN37 AC148477.8-201ENST00000624298 468 ntBASIC16.61■□□□□ 0.25
VPS4AQ9UN37 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4AQ9UN37 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms