Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 FAM215A-202ENST00000632077 792 ntBASIC17.7■□□□□ 0.42
NEK3P51956 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.7■□□□□ 0.42
NEK3P51956 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 AL353593.2-201ENST00000602529 1483 ntBASIC17.69■□□□□ 0.42
NEK3P51956 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.69■□□□□ 0.42
NEK3P51956 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 AC060834.1-201ENST00000443027 2032 ntBASIC17.69■□□□□ 0.42
NEK3P51956 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.69■□□□□ 0.42
NEK3P51956 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
NEK3P51956 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 HNRNPDP1-201ENST00000439535 754 ntBASIC17.69■□□□□ 0.42
NEK3P51956 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.69■□□□□ 0.42
NEK3P51956 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.69■□□□□ 0.42
NEK3P51956 AC025062.2-201ENST00000605477 670 ntBASIC17.69■□□□□ 0.42
NEK3P51956 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 AC073592.4-201ENST00000623827 446 ntBASIC17.69■□□□□ 0.42
NEK3P51956 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 AC105020.1-201ENST00000435356 2205 ntBASIC17.69■□□□□ 0.42
NEK3P51956 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
NEK3P51956 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
NEK3P51956 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
NEK3P51956 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
NEK3P51956 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.69■□□□□ 0.42
NEK3P51956 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
NEK3P51956 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.68■□□□□ 0.42
NEK3P51956 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 RPS2P1-201ENST00000434010 821 ntBASIC17.68■□□□□ 0.42
NEK3P51956 AP000347.1-202ENST00000435868 847 ntBASIC17.68■□□□□ 0.42
NEK3P51956 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 BX005266.1-201ENST00000473402 457 ntBASIC17.68■□□□□ 0.42
NEK3P51956 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.68■□□□□ 0.42
NEK3P51956 OR7E14P-202ENST00000530490 1290 ntBASIC17.68■□□□□ 0.42
NEK3P51956 MTDHP4-201ENST00000600287 670 ntBASIC17.68■□□□□ 0.42
NEK3P51956 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
NEK3P51956 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.68■□□□□ 0.42
NEK3P51956 AL049757.1-201ENST00000616842 1596 ntBASIC17.68■□□□□ 0.42
NEK3P51956 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.68■□□□□ 0.42
NEK3P51956 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
NEK3P51956 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
NEK3P51956 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.68■□□□□ 0.42
NEK3P51956 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms