Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.92□□□□□ -0.02
COL8A1P27658 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.92□□□□□ -0.02
COL8A1P27658 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 LINC01225-203ENST00000563550 1244 ntBASIC14.92□□□□□ -0.02
COL8A1P27658 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.92□□□□□ -0.02
COL8A1P27658 MIR4453-201ENST00000584019 89 ntBASIC14.92□□□□□ -0.02
COL8A1P27658 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL8A1P27658 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.92□□□□□ -0.02
COL8A1P27658 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 AR-207ENST00000612010 3896 ntTSL 5 BASIC14.92□□□□□ -0.02
COL8A1P27658 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.91□□□□□ -0.02
COL8A1P27658 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.91□□□□□ -0.02
COL8A1P27658 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 AC138969.3-201ENST00000546612 1459 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 AC138932.2-201ENST00000548268 1459 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 AC126755.4-201ENST00000549796 1459 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.91□□□□□ -0.02
COL8A1P27658 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.91□□□□□ -0.02
COL8A1P27658 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 GIMAP3P-201ENST00000495150 836 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 SLC25A6P2-201ENST00000497974 877 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL8A1P27658 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.91□□□□□ -0.02
COL8A1P27658 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 AL590560.3-201ENST00000623350 461 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
COL8A1P27658 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
COL8A1P27658 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 AC100757.3-201ENST00000622361 1406 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 AKAP8P1-201ENST00000434743 1349 ntBASIC14.91□□□□□ -0.02
COL8A1P27658 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL8A1P27658 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
COL8A1P27658 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
COL8A1P27658 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 MIR658-201ENST00000385210 100 ntBASIC14.9□□□□□ -0.02
COL8A1P27658 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
COL8A1P27658 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 SPTLC1P1-201ENST00000447199 261 ntBASIC14.9□□□□□ -0.02
COL8A1P27658 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.9□□□□□ -0.02
COL8A1P27658 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 IGHV3-52-201ENST00000519770 353 ntBASIC14.9□□□□□ -0.02
COL8A1P27658 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.9□□□□□ -0.02
COL8A1P27658 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms