Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.25■□□□□ 0.19
COL5A1P20908 GK-202ENST00000378941 458 ntTSL 3 BASIC16.25■□□□□ 0.19
COL5A1P20908 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.25■□□□□ 0.19
COL5A1P20908 PIN1P1-201ENST00000412108 996 ntBASIC16.25■□□□□ 0.19
COL5A1P20908 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.25■□□□□ 0.19
COL5A1P20908 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.25■□□□□ 0.19
COL5A1P20908 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.25■□□□□ 0.19
COL5A1P20908 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 FOXO1B-201ENST00000504678 1527 ntBASIC16.25■□□□□ 0.19
COL5A1P20908 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.25■□□□□ 0.19
COL5A1P20908 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL5A1P20908 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.24■□□□□ 0.19
COL5A1P20908 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.24■□□□□ 0.19
COL5A1P20908 AC073389.1-201ENST00000595595 795 ntBASIC16.24■□□□□ 0.19
COL5A1P20908 SPDYE12P-201ENST00000618416 771 ntBASIC16.24■□□□□ 0.19
COL5A1P20908 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.24■□□□□ 0.19
COL5A1P20908 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.24■□□□□ 0.19
COL5A1P20908 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
COL5A1P20908 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL5A1P20908 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL5A1P20908 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.23■□□□□ 0.19
COL5A1P20908 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.23■□□□□ 0.19
COL5A1P20908 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL5A1P20908 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.23■□□□□ 0.19
COL5A1P20908 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.23■□□□□ 0.19
COL5A1P20908 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.23■□□□□ 0.19
COL5A1P20908 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.23■□□□□ 0.19
COL5A1P20908 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
COL5A1P20908 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL5A1P20908 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL5A1P20908 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL5A1P20908 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.22■□□□□ 0.19
COL5A1P20908 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL5A1P20908 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.22■□□□□ 0.19
COL5A1P20908 AL512638.1-201ENST00000457493 794 ntBASIC16.22■□□□□ 0.19
COL5A1P20908 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.22■□□□□ 0.19
COL5A1P20908 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 AL138828.2-201ENST00000615812 383 ntBASIC16.22■□□□□ 0.19
COL5A1P20908 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 AC007613.1-201ENST00000572811 2597 ntBASIC16.22■□□□□ 0.19
COL5A1P20908 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
COL5A1P20908 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.22■□□□□ 0.19
COL5A1P20908 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL5A1P20908 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.22■□□□□ 0.19
COL5A1P20908 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.22■□□□□ 0.19
COL5A1P20908 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms