Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.17■□□□□ 0.66
MSH4O15457 AC004877.2-201ENST00000623941 599 ntBASIC19.17■□□□□ 0.66
MSH4O15457 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MSH4O15457 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
MSH4O15457 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH4O15457 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.17■□□□□ 0.66
MSH4O15457 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.16■□□□□ 0.66
MSH4O15457 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
MSH4O15457 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MSH4O15457 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
MSH4O15457 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.16■□□□□ 0.66
MSH4O15457 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MSH4O15457 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.16■□□□□ 0.66
MSH4O15457 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MSH4O15457 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MSH4O15457 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
MSH4O15457 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
MSH4O15457 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.15■□□□□ 0.66
MSH4O15457 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
MSH4O15457 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.15■□□□□ 0.66
MSH4O15457 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.15■□□□□ 0.66
MSH4O15457 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.15■□□□□ 0.66
MSH4O15457 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.15■□□□□ 0.66
MSH4O15457 KRT19P2-202ENST00000557173 1012 ntBASIC19.15■□□□□ 0.66
MSH4O15457 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.15■□□□□ 0.66
MSH4O15457 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.15■□□□□ 0.66
MSH4O15457 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.15■□□□□ 0.66
MSH4O15457 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 BCAR1-209ENST00000546196 1340 ntBASIC19.15■□□□□ 0.66
MSH4O15457 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 TOP3BP1-201ENST00000420768 1380 ntBASIC19.15■□□□□ 0.66
MSH4O15457 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
MSH4O15457 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.15■□□□□ 0.66
MSH4O15457 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MSH4O15457 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
MSH4O15457 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
MSH4O15457 AC012313.1-201ENST00000593393 3059 ntBASIC19.14■□□□□ 0.66
MSH4O15457 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
MSH4O15457 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH4O15457 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.14■□□□□ 0.65
MSH4O15457 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.14■□□□□ 0.65
MSH4O15457 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
MSH4O15457 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.14■□□□□ 0.65
MSH4O15457 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
MSH4O15457 AC023511.2-201ENST00000618803 211 ntBASIC19.14■□□□□ 0.65
MSH4O15457 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
MSH4O15457 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 AC025580.3-201ENST00000617932 1424 ntBASIC19.14■□□□□ 0.65
MSH4O15457 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
MSH4O15457 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MSH4O15457 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 159.8 ms