Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS28Q9UK41 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 PP12613-201ENST00000424958 2230 ntBASIC17.66■□□□□ 0.42
VPS28Q9UK41 AC084018.2-201ENST00000613093 2607 ntBASIC17.66■□□□□ 0.42
VPS28Q9UK41 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.66■□□□□ 0.42
VPS28Q9UK41 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 RPS15P9-201ENST00000494093 319 ntBASIC17.66■□□□□ 0.42
VPS28Q9UK41 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 AC145285.3-201ENST00000564603 959 ntBASIC17.66■□□□□ 0.42
VPS28Q9UK41 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS28Q9UK41 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS28Q9UK41 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 AL138688.1-201ENST00000624851 1594 ntBASIC17.65■□□□□ 0.42
VPS28Q9UK41 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VPS28Q9UK41 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS28Q9UK41 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS28Q9UK41 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS28Q9UK41 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS28Q9UK41 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 PTCHD3P3-201ENST00000403073 906 ntBASIC17.64■□□□□ 0.41
VPS28Q9UK41 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 PMS2P1-201ENST00000431037 1228 ntBASIC17.64■□□□□ 0.41
VPS28Q9UK41 AC108751.1-201ENST00000490852 363 ntBASIC17.64■□□□□ 0.41
VPS28Q9UK41 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 AL805961.1-202ENST00000641562 540 ntBASIC17.64■□□□□ 0.41
VPS28Q9UK41 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS28Q9UK41 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS28Q9UK41 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms